Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs5013014 chr22:18449927 T/C 2.94E-6 489 30.8 31.9 27.08 KM Plot
PRAD rs55638790 chr2:10480389 C/T 6.74E-10 493 29.95 33.13 10.03 KM Plot
PRAD rs55643441 chr12:10737488 G/A 5.61E-5 487 30.8 32.63 19.93 KM Plot
PRAD rs556446 chr1:93567517 C/T 1.18E-8 492 31.38 25.83 9.17 KM Plot
PRAD rs55683245 chr1:1157372 G/A 3.49E-9 490 31.27 30.73 13.73 KM Plot
PRAD rs55685722 chr11:68202611 G/A 1.82E-5 492 29.23 33.48 26.3 KM Plot
PRAD rs55727864 chr2:204826414 C/A 3.27E-5 491 30.87 31.63 20.33 KM Plot
PRAD rs55761800 chr2:228175862 C/T 0.000146 489 31.27 32.63 20.93 KM Plot
PRAD rs55792466 chr6:7250474 C/T 7.19E-5 491 32.4 27.57 24.27 KM Plot
PRAD rs55814327 chr19:49988423 CTCAAGTGT/C 4.17E-5 487 30.53 33.3 26.8 KM Plot
PRAD rs55826463 chr12:69280272 C/T 0.000122 487 29.4 37.17 24.27 KM Plot
PRAD rs55829986 chr12:729919 C/T 0.000148 490 31.33 28.13 22.67 KM Plot
PRAD rs55857066 chr2:235005916 A/G 5.72E-5 474 31.37 30.23 30.83 KM Plot
PRAD rs55861830 chr17:58177037 CA/C 1.76E-5 494 30.8 31 26.93 KM Plot
PRAD rs55865752 chr22:18444227 G/A 4.05E-6 493 30.8 31.93 26.37 KM Plot